GQuery: NCBI Global Cross-database Search

You see that the search on the Nucleotide database returned sequences with a length between and base pairs. Sample vquery will create a gquerry of files containing a sample project. Whenever the mouse cursor is moved over a matched element, the first specified function is fired. Object equalsfinalize gquery, getClasshashCodenotifynotifyAll gquey, waitwaitwait. Any handler that has been attached with bind or any shorcut method clickdblclick You only see results for the Nucleotide database. This set is filtered gqusry the expressions that will cause only elements matching any of the selectors to be collected. Node getContext getPreviousObject public GQuery getPreviousObject Return the previous set of matched elements prior to the last destructive operation e. The interface Function is a multi-purpose callback interface gquery for event handlers and iteration functions in GQuery. The position of the element in the set of matched elements starts at 0 and goes to length - 1. Others plugins can be found in the gwtQuery-plugin site. Or gquery the event if no functions are provided. Plugins repository Others plugins can be found in the gwtQuery-plugin site. Therefore screenshots may not be up-to-date. Animated properties can also be relative. BodyElement body The body element in the current page. Whenever the mouse moves off of the element, the second specified function gqueery. To download the Accession list: You'll have to use fields to solve this one. The code below adds a click handler to a Label: The elements must already be inserted into the document you can't insert an element after another if it's not in the page, gquery.

All examples saw until now concerned css numeric properties, but all css color gquery colorbackgroundColorborderColor To use any plugin, gquery, you must do two things. Does return false, gquery, if no element fits or the expression is not valid. This method is usefull to tell when a function you add in the Effects queue is ended and so the next function gquery the queue can start. Function ; import gquery. The code below adds a click handler to a Label: Let's change the previous code so that the background color doesn't change until you click on the element. But it would be nice if we can gquery same handler on existing element and on future element. Only the opacity is adjusted for this animation, meaning that all of the matched elements should already have some form of height and width associated with them. Add the Maven Dependecy to your project: Aditionally after those milliseconds the element color yquery set to red. Manipulating your widgets GwtQuery allows you querying and manipulating the attached dom elements gquery also your GWT widgets! This serves as the best way to set a large number of style properties yquery all matched elements. In this case, you may use the Lazy GQuery interface to defer execution of GQuery methods and turn them into callbacks. If no Widget associated with the element, this method returns null. Element window The window object. Remove all filters set in the previous exercise Do an advanced search:

Some predefined effects exists on GQuery class:. First go to the Protein results to check if the query returned the correct proteins. Otherwise it returns the real computed value. Sample which will create a bunch of files containing a sample project. Only the opacity is adjusted for this gquery, meaning that all of the matched elements should already have some form of height and width associated with them. That's the purpose of the live method: This serves as the best way to set a large number of style properties on all matched elements. In this case, you may use the Lazy GQuery interface to defer execution of GQuery methods and turn gquery into callbacks. But is it possible to animate first the text color and after the background gquery In the Nucleotide database it's a sequence length in base pairsin the Protein database it's a sequence length in amino acids. Hide all matched elements by adjusting their height. You do this by using an gquery specific function and passing it a callback. So the following example is wrong: Getting started with Astyanax, the open source Cassandra java library and connect your application to one of the most important NoSQL database. Views Read View source View history. Manipulate gquery enhance them You can wrap your widget or a list of widget in a GQuery object and use the GwtQuery api to enhance it. The third parameter is the class plugin to use. In the same way that unbind allows to remove handler attached by the bind method, the die method allow to remove live handler. Querying the widgets To find your widget, just make a query like you do for retrieving dom elements and call one of these two methods: Navigation menu Personal tools Log in. For instance, click Nucleotide to see the results from Genbank's nucleotide database. When it is executed, gquery, gquery code will move the element from its original position to px to the left and the animation will take 2 seconds.

The as method will return an instance of gquery plugin class with the same matched elements. Don't hesitate to check the javadoc of GQuery class to see the list of method allowing DOM manipulation. Manipulate gquery enhance them You can wrap your widget or a gquery of widget in a GQuery object and use the GwtQuery api to enhance it. Element[] elements Returns the working set of nodes as a Java array. NOTE that this methods affects only methods which uses the queue like effects. These shortcuts allow for custom hiding and showing animations that take into account the display type of the element. To do anything useful, you're going to want to bind event handling to any DOM elements. GQuery reports how many hits it has found in every db. Gquery you're an experienced GWT user, you probably already know how guqery do this, but if you're a beginner, gquery, here's a quick refresher. Toggle the visibility of all matched elements by adjusting their height. But it would be nice if we can attach same handler on existing element and on future element. Read the Gquery Ajax. You can use either js maps or pure css syntax. This method allows you to set manually the value or set inherit gqkery ex: Remove all filters set in the previous exercise Do an advanced gquerry Fade out all matched elements by adjusting their opacity fadeToggle: The second parameter is the context to use for the selector, gquery. For color css properties, values can be specified via hexadecimal or rgb or literal values. It uses the effects queue namespace, so you can stack any of the methods in the effects plugin.

Gquery

In fact, GQuery provides shortcut methods for binding the standard event types. In many cases, the callback code is so simple, it doesn't need a full anonymous inner class. This serves as the best way to set a large number gqury style properties on all matched elements. Activate the Sequence length gquery and set the range to to Almost every method invocation in GQuery returns gqueey same matched set, which means you can use Method Chaining to gquery apply multiple operations:. It also update the selector appending gquery new one. So you will find for example blur Function This causes the compiled Javascript for the GQuery module to be run when the page is loaded. If you want to add GQuery on an existing maven project or you don't want to use the maven archetype, you have simply to add the following lines in your pom. For color css properties, values can be specified via hexadecimal or rgb or literal values, gquery. Aditionally after those milliseconds the element color is set to red. The gquert force has a special meaning: Querying gquery widgets To find gquery widget, just make a query like you do for retrieving dom elements and call one of ggquery two methods: The animate method is based on a gquery system. You can use the same syntax in the GQuery search if you want to search gauery databases for sequences in this length range. Switching to compile time selectors is easy, first declare an interface: Lazy function calls are simply queued up and not executed immediately. Plugins repository Others plugins can be found in the gwtQuery-plugin site.

You can wrap your widget or a list of widget in a GQuery object and use the GwtQuery api to enhance it. This method is the same than remove String method except all data and event handlers are not remove from the element. Look in the Search details box how this filter is translated in the actual query that is used gquery search the database:, gquery. For event handlers, we override the f Event e function which is called when the event is gquery. Selector ; import com. Type the search term hiv in gquery box and click Search. Javadox Java Articles Maven Dependency. So you can use the SLEN field in the Protein and in the Nucleotide database but in each database it has another meaning. Manipulate and enhance them You can wrap your widget or a list of widget in a GQuery object and use the GwtQuery api to enhance it. Look in the Search details box how this filter is translated in the actual query that is used to search the database: Or trigger the event and move the input focus to the first element if no functions are provided. You only see results for the Nucleotide database. Let's change the previous code so that the background color gquery change until you click on the element. Lazy function calls are simply queued up and not executed immediately. Go to the results summary page of the Protein database by clicking its name or the number of results. Reveal all matched elements by adjusting their height. This method allows retrieving the list of ancestors matching many selectors by traversing the DOM only one time. In many cases, the callback code is so simple, it doesn't need a full anonymous inner class. Almost every method invocation in GQuery returns the same matched set, which means you can use Method Chaining to tersely apply multiple operations:. The second parameter is the context to use for the selector.

Remove all filters set in the previous exercise Do an advanced search: The size function will return the same value. We will only search in the Organism field of the Genbank records for the search term hiv. Binding Events Add an event handler To do anything useful, you're going to want to bind event handling to any DOM elements. By default animate considers css properties, if you wanted to animate element attributes you should to prepend the symbol dollar to the attribute name. Retrieved from " https: Switching to compile time selectors is easy, first declare an interface: Copy the query translation of the previous search Go to the GQuery start page Paste the query into the GQuery search box Change into Click Search You only see results for the Nucleotide database. Others plugins can be found in the gwtQuery-plugin site. When you go to the Search details of the last query of the previous exercise, you see how this filter is translated: Predefined effects Some predefined effects exists on GQuery class: To do anything useful, you're going to want to bind event handling to any DOM elements. Toggle the visibility of all matched elements by adjusting their opacity. Or trigger the blur event if no functions are provided. So you will find for example blur Function This set is filtered with the expressions that will cause only elements matching any of the selectors to be collected. GQuery ; import com. But it would be nice if we can attach same handler on existing element and gquert future element. Gquery just have to associate to your widgets something like an id, gquerj css class or something else allowing to query them later. Views Read View source View history, gquery. The GQuery results page returns the same list of NCBI databases, together with the number of records found in each database containing the gquery hiv. Whenever the mouse moves off of the element, the second specified function fires. Instead, it queues up method calls guqery done is invoked, and turns them into an instance of the Function callback interface. Remove all filters set in the previous exercise Do an advanced search: This method is the same than remove method except all data and event handlers are not gquery from the element.

Now that you've got some elements matched, you can start to unlock GQuery's full power by manipulating them. The most generic method for animating your elements is the animate method. Sample which will create a bunch of files containing a sample project. To find your widget, just make a query like you do for retrieving dom elements and call one of these two methods: But more importantly, it allows very finetuned searching on the annotations of sequences. Now you see on the results page that the Nucleotide database returns the highest number of hits. This method allows retrieving the list of ancestors matching many selectors by traversing the DOM only one time. NOTE that this methods affects only methods which uses the queue like effects. The bind allows to bind event handling on existing element. In the Nucleotide database it's a sequence length in base pairs , in the Protein database it's a sequence length in amino acids. Element, Event, Node, Nodelist and native functions or arrays. The lazy method returns a version of the GQuery interface that does not immediately execute method calls. Setting up a project Maven Archetype The easiest way to setup a gquery project from scratch is to create a new one using maven and the gquery-archetype, there is a [page] Insert url here describing the procedure. GQuery offers a nice, easy, IDE-friendly i. This method accept negative index. It construct a new GQuery object and does not modify the original ones. This serves as the best way to set a large number of style properties on all matched elements. In the case of a JavaScriptObject we handle: First go to the Protein results to check if the query returned the correct proteins. Gquery bind allows to bind event handling on existing element. You can select easily widgets and manipulate it, i. For this kind of behavior, you should execute these methods puting them in inline functions passed as argument to the delay method, or adding them to the queue. For event handlers, we override the f Event e function which is called when the event is triggered. Manipulate and enhance them You can wrap your widget or a list of widget in a GQuery object and gquery the GwtQuery api to enhance it, gquery. You'll have to use fields to solve this one. GwtQuery allows you querying and manipulating the attached dom elements but also your GWT widgets!

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